Florian Klimm

Submitted

  1. Florian Klimm, Nick S. Jones, and Michael T. Schaub. "Modularity maximisation for graphons." [code] [arXiv]
  2. Sarah M. Griffin and Florian Klimm. "Networks and Museum Collections."

Accepted and/or published

  1. Haixin Zhang, Marco Esposito, Mikael Pezet, Juvid Aryaman, Wei Wei, Florian Klimm, Claudia Calabrese, Stephen P. Burr, Carolina H. Macabelli, Carlo Viscomi, Mitinori Saitou, Marcos R. Chiaratti ,James Stewart, Nick S. Jones and Patrick F. Chinnery. "Mitochondrial DNA heteroplasmy is modulated during oocyte development propagating mutation transmission." Science Advances (accepted)
  2. Mikael G. Pezet, Aurora Gomez-Duran*, Florian Klimm*, Juvid Aryaman, Stephen P. Burr, Wei Wei, Mitinori Saitou, Julien Prudent, and Patrick F. Chinnery. "Oxygen tension modulates the mitochondrial genetic bottleneck and influences the segregation of a heteroplasmic mtDNA variant." Communications Biology [Journal]
  3. Florian Klimm. "Extracting biological context from cellular trajectories." Nature Computational Sciences (invited News & Views article) [Journal]
  4. Florian Klimm, Enrique M. Toledo, Thomas Monfeuga, Fang Zhang, Charlotte M. Deane, and Gesine Reinert. "Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks." BMC Genomics [Journal] [bioRxiv] [code] [link to poster]
    • The poster received the Best Poster Award at the Cambridge Network Day 2019

  5. Florian Klimm, Charlotte M. Deane, and Gesine Reinert. "Hypergraphs for predicting essential genes using multiprotein complex data." Journal of Complex Networks [Journal] [bioRxiv] [code]
  6. Florian Klimm* and Benjamin F. Maier*. "Commentary: A network science summer course for high-school students." Network Science [link] [material] [arXiv] [poster] [slides]
  7. Florian Klimm. "Minimal connections and what they reveal." Mathematics Today. Vol. 56 No. 4 August 2020.
  8. Papadopoulos, Lia, Pablo Blinder, Henrik Ronellenfitsch, Florian Klimm, Eleni Katifori, David Kleinfeld, and Danielle S. Bassett. "Embedding of biological distribution networks with differing environmental constraints." PLoS Computational Biology, 14(9), e1006428. [link] [arXiv]
  9. Megan Sperry, Qawi Telesford, Florian Klimm and Danielle S. Bassett. "Rentian scaling for the measurement of optimal embedding of complex networks into physical space." Journal of Complex Networks 5.2 (2016): 199-218. [link]
  10. Dane Taylor, Florian Klimm, Heather A. Harrington, Miroslav Kramar, Konstantin Mischaikow, Mason A. Porter, and Peter J. Mucha. "Topological data analysis of contagion maps for examining spreading processes on networks." Nature Communications. [link] [arXiv]
  11. Florian Klimm, Javier Borge-Holthoefer, Niels Wessel, Jürgen Kurths, and Gorka Zamora-López. "Individual node's contribution to the mesoscale of complex networks." New Journal of Physics. [link]
  12. Florian Klimm, Danielle S. Bassett, Jean M. Carlson, and Peter J. Mucha. "Resolving structural variability in network models and the brain." PLoS Computational Biology 10, no. 3 (2014): e1003491. [link]

Peer-reviewed extended abstracts

  1. Florian Klimm, Charlotte M. Deane, Jonny Wray and Mason A. Porter. "Reconfiguration of Protein Interaction Networks during Nematode Development." Complex Networks & Their Applications 2017. [link]
    • A version of this talk received the Best Talk Award at the Graduate Student Meeting of the London Mathematical Society in 2017

Theses

SABS short project reports

Study Group Papers

Translations


[AO:] notes papers with alphabetic ordering of authors, independent of their contribution.
* indicates equal contribution by the authors.