As used for "Modulairty maximisation for graphons", please find code here.
As used for "Hypergraphs for predicting essential genes using multiprotein complex data", please find code here.
As used for "Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks", please find code here.
As used for "Topological data analysis of contagion maps for examining spreading processes on networks", please find code here.
Benjamin F. Maier and I tought a two-week summer school for high-school students and the teaching material is available on GitHub.
This excellent library is not created by myself but Jürgen Hackl. You can find it here. It is particularly well-suited for multilayer networks.